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Correspondence: Daniel B. Reeves, dreeves@fredhutch.org
Author contributions: D.B.R., B.T.M., S.T.K., and S.E. conceived the study. D.B.R. and B.T.M. developed the models used in the study. B.T.M. developed the software/code used in the study. D.B.R. and B.T.M. contributed to validation. D.B.R., B.T.M., A.C.dC., Y.H., B.Z., C.A.M., M.J., P.B.G., K.J.B., E.F.C-O, R.R., and P.E. performed analyses. conducted research and/or performed experiments. P.B.G., D.C.M., K.J.B., J.T.S., L.M., N.N.M., C.W., J.I.M., K.E.S., G.D.T., P.A., N.M., J.E.L., M.S.C., L.C., L.N., C.O., P.A.G., M.C., M.E.S., S.T.K., and S.E. provided study materials, laboratory samples, computing resources or other analysis tools. D.B.R., B.T.M., A.C.dC., C.A.M., and P.B.G. curated data. D.B.R. and B.T.M. performed visualization/data presentation. P.B.G., D.C.M., J.T.S., P.E., C.W., J.I.M., G.D.T., M.S.C., L.C., M.E.S., S.T.K., and S.E. supervised effort on this work. P.B.G., G.D.T., M.S.C., and L.C. acquired funding. D.B.R., B.T.M., and L.N.C. wrote the manuscript. All coauthors reviewed and edited the manuscript and provided approval of the final version. These authors contributed equally: Daniel B. Reeves, Bryan T. Mayer. These authors jointly supervised this work: Shelly T. Karuna, Srilatha Edupuganti.
Competing interests: The authors declare no competing interests.
This work was supported by the National Institutes of Health through award numbers R01 AI150500 (E.F. C-O.), UM1 AI068614 (G.D.T., L.C.), UM1 AI068635 (Y.H., P.B.G.), 4 R37 AI054165-21 (P.B.G.), UM1 AI068618, UM1 AI068619 (M.S.C), UM1 AI068613, UM1 AI068617, P30 AI027757, P30 AI064518, K25 AI155224 (D.B.R.), the Intramural Research Program of the National Institute of Allergy and Infectious Diseases, and the South African Medical Research Council (SAMRC).
© The Author(s) 2023, corrected publication 2024