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Correspondence: David Weiss, PhD, Emory Antibiotic Resistance Center, Emory University School of Medicine, Atlanta, Georgia. david.weiss@emory.edu & Arash Grakoui, PhD, Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia. arash.grakoui@emory.edu
Acknowledgements: We thank Dr. Ralph Norgren for insightful discussions, advice, and critical review of the manuscript. We thank the Flow Cytometry, Virology and Pathology Cores of Emory Vaccine Center, and the veterinary and animal care staff of Emory National Primate Research Center, Emory University for their assistance. This study was supported in part by the Emory Integrated Genomics Core (EIGC), which is subsidized by the Emory University School of Medicine and is one of the Emory Integrated Core Facilities. We are also grateful to Lyra M. Griffiths (EIGC) for her assistance in metagenomic sequencing and analyses, and Evan Dessasau (Pathology Core) for their assistance in histopathological analyses. We are also thankful to LC Sciences (Houston) Bioinformatics services for their assistance in analyses including diversity, taxonomy, and differential analyses for bacterial families.
Competing interests: The authors have no conflicts of interest to disclose.
This project was supported by NIH grants R01AI124680, R01AI126890, R01AI136533, U19AI159819 to A.G., ORIP/OD P51OD011132 (formerly NCRR P51RR000165) to the Emory National Primate Research Center (A.G.), and a Burroughs Wellcome Fund Investigator in the Pathogenesis of Infectious Disease award (D.S.W.). M.T. was supported by National Institute of Diabetes, and Digestive and Kidney Diseases (NIDDK) Mentored Career Development Award (K01DK109025). A.K. is supported by Alzheimer’s Association Fellowship (AARFD-23-1145367). This work was facilitated by the Immunology and Flow Cytometry Core of the Center for AIDS Research at Emory University (P30AI050409). J.E.C. was supported by T32DK108735 from NIDDK and the Cystic Fibrosis Foundation (CHOBY19F0).
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