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  • Effect of Biannual Azithromycin to Children under 5 Years on the Carriage of Respiratory Pathogens among Children Aged 7-11 Years

    Effect of Biannual Azithromycin to Children under 5 Years on the Carriage of Respiratory Pathogens among Children Aged 7-11 Years
    Authors:Stephanie A Brennhofer, University of Virginia, CharlottesvilleElizabeth McQuade, Emory UniversityJixian Zhang, University of Virginia, CharlottesvilleSuporn Pholwat, University of Virginia, CharlottesvilleSuzanne Stroup, University of Virginia, CharlottesvilleJames A Platts-Mills, University of Virginia, CharlottesvilleJie Liu, Emory UniversityEric R Houpt, University of Virginia, Charlottesville
    Date:2023
    Publisher:AMER SOC TROP MED & HYGIENE
    Publication Version:Final Published Version
    License:Creative Commons Attribution 4.0 International

  • Emerging vaccine strategies against the incessant pneumococcal disease

    Emerging vaccine strategies against the incessant pneumococcal disease
    Authors:Jeremy A. Duke, SanofiFikri Avci, Emory University
    Date:2023
    Publisher:NATURE PORTFOLIO
    Publication Version:Final Published Version
    License:Creative Commons Attribution 4.0 International

  • Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13

    Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13
    Authors:Sophie Belman, Wellcome Sanger InstituteSona Soeng, Angkor Hospital for ChildrenChansovannara Soputhy, Angkor Hospital for ChildrenRebecca Gladstone, Wellcome Sanger InstitutePaulina A Hawkins, Emory UniversityRobert Breiman, Emory UniversityLesley McGee, Centers for Disease Control and Prevention, AtlantaStephen D Bentley, Wellcome Sanger InstituteStephanie W Lo, Wellcome Sanger InstitutePaul Turner, Angkor Hospital for Children
    Date:2022
    Publisher:MICROBIOLOGY SOC
    Publication Version:Final Published Version
    License:Creative Commons Attribution-NonCommercial 4.0 International

  • Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction

    Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction
    Authors:Robert Breiman, Emory UniversityKeith Klugman, Emory UniversityMadikay Senghore, London School of Hygiene & Tropical MedicinePeggy-Estelle Tientcheu, London School of Hygiene & Tropical MedicineArchibald K Worwui, London School of Hygiene & Tropical MedicineSheikh Jarju, London School of Hygiene & Tropical MedicineCatherine Okoi, London School of Hygiene & Tropical MedicineSambou MS Suso, London School of Hygiene & Tropical MedicineEbenezer Foster-Nyarko, London School of Hygiene & Tropical MedicineChinelo Ebruke, London School of Hygiene & Tropical MedicineMohamadou Sonko, ​Hopital d’Enfants Albert RoyerMamdou Hama Kourna, Hospital National NiameyJoseph Agossou, University of ParakouEnyonam Tsolenyanu, Centre Hospitalier Universitaire de Tokoin LoméLorna Awo Renner, Korle-Bu Teaching HospitalDaniel Ansong, Komfo Anokye Teaching HospitalBakary Sanneh, Edward Francis Small Teaching HospCatherine Boni Cisse, Institut Pasteur de Cote d'IvoireAngeline Boula, Centre Mere et Enfant de la FondationBerthe Miwanda, Institut National de Recherche BiomedicaleStephanie W Lo, Wellcome Sanger InstituteRebecca A Gladstone, Wellcome Sanger InstituteStephanie Schwartz, Centers for Disease Control and Prevention, AtlantaPaulina Hawkins, Centers for Disease Control and Prevention, AtlantaLesley McGee, Centers for Disease Control and Prevention, AtlantaSeith D Bentley, Wellcome Sanger InstituteJason M Mwenda, WHOBrenda Anna Kwambana-Adams, London School of Hygiene & Tropical MedicineMartin Antonio, London School of Hygiene & Tropical Medicine
    Date:2021
    Publisher:MICROBIOLOGY SOC
    Publication Version:Final Published Version
    License:Creative Commons Attribution 4.0 International

  • Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing

    Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing
    Authors:Ekaterina Egorova, G. N. Gabrichevsky Research Institute for Epidemiology and MicrobiologyNarender Kumar, Wellcome Sanger InstituteRebecca A Gladstone, Wellcome Sanger InstituteYulia Urban, G. N. Gabrichevsky Research Institute for Epidemiology and MicrobiologyElena Voropaeva, G. N. Gabrichevsky Research Institute for Epidemiology and MicrobiologyAV Chaplin, G. N. Gabrichevsky Research Institute for Epidemiology and MicrobiologyElena Rumiantseva, Labstory Medical Center, Saint PetersburgTS Svistunova, ​Infectious Clinical HospitalPaulina A Hawkins, Centers for Disease Control and Prevention, AtlantaKeith Klugman, Emory UniversityRobert Breiman, Emory UniversityLesley McGee, Centers for Disease Control and Prevention, AtlantaStephen D Bentley, Wellcome Sanger InstituteStephanie W Lo, Wellcome Sanger Institute
    Date:2022
    Publisher:MICROBIOLOGY SOC
    Publication Version:Final Published Version
    License:Creative Commons Attribution 4.0 International

  • The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci

    The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci
    Authors:Joshua C D'Aeth, Imperial College LondonMark PG van der Linden, University Hospital RWTH AachenLesley McGee, Centers for Disease Control and Prevention, AtlantaHerminia de Lencastre, Universidade Nova de LisboaPaul Turner, Angkor Hospital for ChildrenJae-Hoon Song, Sungkyunkwan UniversityStephanie W Lo, Wellcome Sanger InstituteRebecca A Gladstone, Wellcome Sanger InstituteRaquel Sá-Leão, Universidade Nova de LisboaKwan Soo Ko, Sungkyunkwan UniversityWilliam P Hanage, Harvard T.H. Chan School of Public HealthRobert Breiman, Emory UniversityBernard Beall, Centers for Disease Control and Prevention, AtlantaStephen D Bentley, Wellcome Sanger InstituteNicholas J Croucher, Imperial College London
    Date:2021
    Publisher:ELIFE SCIENCES PUBLICATIONS LTD
    Publication Version:Final Published Version
    License:Creative Commons Universal : Public Domain Dedication

  • Lives saved with vaccination for 10 pathogens across 112 countries in a pre-COVID-19 world

    Lives saved with vaccination for 10 pathogens across 112 countries in a pre-COVID-19 world
    Authors:Jaspreet Toor, MRC Centre for Global Infectious Disease AnalysisSusy Echeverria-Londono, MRC Centre for Global Infectious Disease AnalysisXiang Li, MRC Centre for Global Infectious Disease AnalysisKaja Abbas, London School of Hygiene & Tropical MedicineEmily D Carter, Johns Hopkins UniversityHannah E Clapham, Natl Univ SingaporeAndrew Clark, London School of Hygiene & Tropical MedicineMargaret J de Villiers, MRC Centre for Global Infectious Disease AnalysisKirsten Eilertson, Colorado State UniversityMatthew Ferrari, Pennsylvania State UniversityIvane Gamkrelidze, Center for Disease Analysis Foundation, LafayetteTimothy B Hallett, MRC Centre for Global Infectious Disease AnalysisWes R Hinsley, MRC Centre for Global Infectious Disease AnalysisDaniel Hogan, Vaccine AllianceJohn H Huber, University of Notre DameMichael L Jackson, Kaiser Permanente WashingtonKevin Jean, MRC Centre for Global Infectious Disease AnalysisMark Jit, London School of Hygiene & Tropical MedicineAndromachi Karachaliou, University of CambridgePetra Klepac, London School of Hygiene & Tropical MedicineAlicia Kraay, Emory UniversityJustin Lessler, Johns Hopkins UniversityXi Li, Independent, AtlantaBenjamin Lopman, Emory UniversityTewodaj Mengistu, Vaccine AllianceJessica CE Metcalf, Princeton UniversitySean M Moore, University of Notre DameShevanthi Nayagam, MRC Centre for Global Infectious Disease AnalysisTimos Papadopoulos, Public Health EnglandAlex T Perkins, University of Notre DameAllison Portnoy, Harvard UniversityHomie Razavi, Center for Disease Analysis Foundation, LafayetteDevin Razavi-Shearer, Center for Disease Analysis Foundation, LafayetteStephen Resch, Harvard UniversityColin Sanderson, London School of Hygiene & Tropical MedicineSteven Sweet, Harvard UniversityYvonne Tam, Johns Hopkins UniversityHira Tanvir, London School of Hygiene & Tropical MedicineQuan Tran Minh, University of Notre DameCaroline L Trotter, University of CambridgeShuan A Truelove, Johns Hopkins UniversityEmilia Vynnycky, Public Health EnglandNeff Walker, Johns Hopkins UniversityAmy Winter, Johns Hopkins UniversityKim Woodruff, MRC Centre for Global Infectious Disease AnalysisNeil M Ferguson, MRC Centre for Global Infectious Disease AnalysisKaty AM Gaythorpe, MRC Centre for Global Infectious Disease Analysis
    Date:2021
    Publisher:eLIFE SCIENCES PUBL LTD
    Publication Version:Final Published Version
    License:Creative Commons Attribution 4.0 International

  • Effect of childhood vaccination and antibiotic use on pneumococcal populations and genome-wide associations with disease among children in Nepal: an observational study

    Effect of childhood vaccination and antibiotic use on pneumococcal populations and genome-wide associations with disease among children in Nepal: an observational study
    Authors:Rama Kandasamy, University of New South WalesStephanie Lo, Wellcome Sanger InstituteMeeru Gurung, Patan Academy of Health SciencesMichael J Carter, University of OxfordRebecca Gladstone, Wellcome Sanger Institute, HinxtonJohn Lees, European Bioinformatics Institute EMBL-EBISonu Shrestha, University of OxfordStephen Thorson, Patan Academy of Health SciencesSanjeev Bijukchhe, Patan Academy of Health SciencesMadhav C Gautam, Patan Academy of Health SciencesReetu Shrestha, Patan Academy of Health SciencesSunaina Gurung, Patan Academy of Health SciencesBibek Khadka, Patan Academy of Health SciencesLesley McGee, Centers for Disease Control and Prevention, AtlantaRobert Breiman, Emory UniversityDavid R Murdoch, University of OtagoDominic F Kelly, University of OxfordShrijana Shrestha, Patan Academy of Health SciencesStepehn D Bentley, Wellcome Sanger Institute, HinxtonAndrew J Pollard, University of Oxford
    Date:2022
    Publisher:ELSEVIER
    Publication Version:Final Published Version
    License:Creative Commons Attribution 4.0 International

  • Pneumococcal Carriage in Infants Post-PCV10 Introduction in Pakistan: Results from Serial Cross-Sectional Surveys

    Pneumococcal Carriage in Infants Post-PCV10 Introduction in Pakistan: Results from Serial Cross-Sectional Surveys
    Authors:Shahira Shahid, Aga Khan UniversityAmala Khan, Aga Khan UniversityMuhammad Imran Nisar, Aga Khan UniversityFarah Khalid, Aga Khan UniversityMuhammad Farrukh Qazi, Aga Khan UniversitySheraz Ahmed, Aga Khan UniversityFurqan Kabir, Aga Khan UniversityAneeta Hotwani, Aga Khan UniversitySahrish Muneer, Aga Khan UniversitySyed Asad Ali, Aga Khan UniversityCynthia Whitney, Emory UniversityAnita KM Zaidi, Aga Khan UniversityFyezah Jehan, Aga Khan University
    Date:2022
    Publisher:MDPI
    Publication Version:Final Published Version
    License:Creative Commons Attribution 4.0 International

  • Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci

    Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci
    Authors:Chrispin Chaguza, Wellcome Sanger InstituteChinelo Ebruke, London School of Hygiene & Tropical MedicineMadikay Senghore, London School of Hygiene & Tropical MedicineStephanie W Lo, Wellcome Sanger InstitutePeggy-Estelle Tientcheu, London School of Hygiene & Tropical MedicineRebecca A Gladstone, Wellcome Sanger InstituteGerry Tonkin-Hill, Wellcome Sanger InstituteJennifer E Cornick, University of LiverpoolMarie Yang, University of LiverpoolAarchibald Worwui, London School of Hygiene & Tropical MedicineLesley McGee, Centers for Disease Control and Prevention, AtlantaRobert Breiman, Emory UniversityKeith Klugman, Emory UniversityAras Kadioglu, University of LiverpoolDean B Everett, Khalifa UniversityGrant Mackenzie, London School of Hygiene & Tropical MedicineNicholas J Croucher, Imperial College LondonAnna Roca, London School of Hygiene & Tropical MedicineBrenda A Kwambana-Adams, London School of Hygiene & Tropical MedicineMartin Antonio, London School of Hygiene & Tropical MedicineStephen D Bentley, Wellcome Sanger Institute
    Date:2022
    Publisher:OXFORD UNIV PRESS
    Publication Version:Final Published Version
    License:Creative Commons Attribution 4.0 International